Google Scholar citation data for Perry GH


Harrison GF, Sanz J, Boulais J, Mina MJ, Grenier JC, Leng Y, Dumaine A, Yotova V, Bergey CM, Nsobya SL, Elledge SJ, Schurr E, Quintana-Murci L, Perry GH*, & Barreiro LB* (2019), Natural selection contributed to immunological differences between human hunter-gatherers and agriculturalists. Nature Ecology and Evolution 3:1253-64. *co-senior authors.

Perry GH & Makarewicz CA (2019), Horse paleogenomes and human-animal interactions in prehistory. Trends in Genetics 35:473-5.

Lopez M, Choin J, Sikora M, Siddle K, Harmant C, Costa HA, Silvert M, Mouguiama-Daouda P, Hombert JM, Froment A, Le Bomin S, Perry GH, Barreiro LB, Bustamante CD, Verdu P, Patin E, & Quintana-Murci L (2019). Genomic evidence for local adaptation of hunter-gatherers to the African rainforest. Current Biology 29:2926-35.

Zavala EI, Rajagopal S, Perry GH, Kruzic I, Bašić Ž, Parsons TJ, & Holland MM (2019). Impact of DNA degradation on massively parallel sequencing-based autosomal STR, iiSNP, and mitochondrial DNA typing systems. International Journal of Legal Medicine 133:1369-80.


Bergey CM, Lopez M, Harrison GF, Patin E, Cohen J, Quintana-Murci L, Barreiro LB, & Perry GH (2018), Polygenic adaptation and convergent evolution on growth and cardiac genetic pathways in African and Asian rainforest hunter-gatherers. Proceedings of the National Academy of Sciences USA 115:E11256-63.

Lopez M, Kousathanas A, Quach H, Harmant C, Mouguiama-Daouda P, Hombert JM, Froment A, Perry GH, Barreiro LB, Verdu P, Patin E, & Quintana-Murci L (2018), The demographic history and mutational load of African hunter-gatherers and farmers. Nature Ecology and Evolution 2:721-30.

Aylward ML, Sullivan AP, Perry GH, Johnson SE, & Louis EE (2018), An environmental DNA sampling method for aye-ayes from their feeding traces. Ecology and Evolution 8:9229-40.

Hixon SW, Elliott Smith EA, Crowley BE, Perry GH, Randrianasy J, Ranaivoarisoa JF, Kennett DJ, & Newsome SD (2018), Nitrogen isotope (d15N) patterns for amino acids in lemur bones are inconsistent with aridity driving megafaunal extinction in south-western Madagascar. Journal of Quaternary Science 33:958-68.


Marciniak S & Perry GH (2017), Harnessing ancient genomes to study the history of human adaptation. Nature Reviews Genetics 18:659-74.

Perry GH & Codding BF (2017), Stone tool use: Monkeys overharvest shellfish. eLife 3:e30865.

Sullivan AP, Bird DW, & Perry GH (2017), Human behaviour as a long-term ecological driver of non-human evolutionNature Ecology and Evolution 1:0065.

Evanitsky MN, George RJ, Johnson S, Dowell S, & Perry GH (2017), Mitochondrial genomes of the extinct Nittany Lion (Puma concolor from Pennsylvania). bioRxiv.

Patin E, Lopez M, Grollemund R, Verdu P, Harmant C, Quach H, Laval G, Perry GH, Barreiro LB, Froment A, Heyer E, Massougbodji A, Fortes-Lima C, Bellis G, Dugoujon JM, Pereira JB, Fernandes V, Pereira L, Van der Veen L, Mouguiama-Daouda P, Bustamante CD, Hombert JM, & Quintana-Murci L (2017), Dispersals and genetic adaptation of Bantu-speaking populations in Africa and North America. Science 356:543-6.

Kennett DJ, Plog S, George RJ, Culleton BJ, Watson AS, Skoglund P, Rohland N, Mallick S, Stewardson K, Kistler L, LeBlanc SA, Whiteley PM, Reich D, & Perry GH (2017), Archaeogenomic evidence reveals prehistoric matrilineal dynastyNature Communications 8:14115.

Sullivan AP, de Manuel M, Marques-Bonet T, & Perry GH (2017), An evolutionary medicine perspective on Neandertal extinction. Journal of Human Evolution 108:62-71.

Vukelic A, Cohen JA, Sullivan AP, & Perry GH (2017), Extending genome-wide association study results to test classic anthropological hypotheses: Human third molar agenesis and the 'probable mutation effect.' Human Biology 89:157-69.

Bankoff RJJerjos MHohman B, Lauterbur E, Kisler L, & Perry GH (2017), Testing convergent evolution in auditory processing genes between echolocating mammals and the aye-aye, a percussive-foraging primate. Genome Biology & Evolution 9:1978-89.

Kistler LJohnson SM, Irwin MT, Louis EE, Ratan A, & Perry GH (2017), A massively parallel strategy for STR marker development, capture, and genotyping. Nucleic Acids Research 45:e142.

Perry GH & Verdu P (2017), Genomic perspectives on the history and evolutionary ecology of tropical rainforest occupation by humansQuaternary International 448:150-7.

Crowley BE, Godfrey LR, Bankoff RJPerry GH, Culleton BJ, Kennett DJ, Sutherland MR, Samonds KE, & Burney DA (2017), Island-wide aridity did not trigger recent megafaunal extinctions in MadagascarEcography 40:901-12.

Moritz GL, Ong PS, Perry GH, & Dominy NJ (2017), Functional preservation and variation in the cone opsin genes of nocturnal tarsiers. Philosophical Transactions of the Royal Society B 372:20160075.

Trizzino M, Park Y, Holsach-Beltrame M, Aracena K, Mika K, Caliskan M, Perry GH, Lynch VJ, & Brown CD (2017), Transposable elements are the primary source of novelty in primate gene regulation. Genome Research 27:1623:33.

Lei R, Frasier CL, Hawkins MTR, Engberg SE, Bailey CA, Johnson SE, McClain AT, Groves CP, Perry GH, Nash SD, Mittermeier RA, & Louis EE (2017), Phylogenomic reconstruction of sportive lemurs (genus Lepilemur) recovered from mitogenomes with inferences for Madagascar biogeographyJournal of Heredity 108:107-19.


Hubbard TS, Murray IA, Bisson W, Sullivan AP, Sebastien A, Perry GH, Jablonski N, & Perdew GH (2016), Divergent Ah receptor ligand selectivity during hominin evolution. Molecular Biology and Evolution 33:2648-58.

Bankoff RJ & Perry GH (2016), Hunter-gatherer genomics: Evolutionary insights and ethical considerationsCurrent Opinion in Genetics and Development 41:1-7.

Thompson KET, Bankoff RJ, Louis EE, & Perry GH (2016), Deadwood structural properties may influence aye-aye (Daubentonia madagascariensis) extractive foraging behavior. International Journal of Primatology 37:281-95.

Federman S, Dornburg A, Daly DC, Downie A, Perry GH, Yoder AD, Sargis EJ, Richard AF, Donoghue MJ, & Baden AL (2016), Implications of lemuriform extinction for the Malagasy flora. Proceedings of the National Academy of Sciences USA 113:5041-6.

Melin AD, Wells K, Moritz GL, Kistler L, Orkin JD, Timm RM, Bernard H, Lakim MB, Perry GH, Kawamura S, & Dominy NJ (2016), Euarchontan opsin variation brings new focus to primate originsMolecular Biology and Evolution 33:1029-41.


Bankoff R, Randrianatoandro HDD, & Perry GH (2015), Primate conservation genomics and paleogenomicsAmerican Anthropologist 117:742-3.

Kistler L, Newsom LA, Ryan TM, Clarke AC, Smith BD, & Perry GH (2015), Gourds and squashes (Cucurbita spp.) adapted to megafaunal extinction and ecological anachronism through domesticationProceedings of the National Academy of Sciences USA 112:15107-12.

Fagny M, Patin E, MacIsaac J, Siddle KJ, Flutre T, Jones M, Quach H, Harmant C, McEwen L, Froment A, Heyer E, Gessain A, Hombert JM, Perry GH, Kobor MS, Barreiro LB, & Quintana-Murci L (2015), The epigenomic landscape of African rainforest hunter-gatherers and farmersNature Communications 6:10047.

Lynch VJ, Bedoya-Reina OC, Ratan A, Sulak M, Drautz-Moses DI, Perry GH, Miller W, & Schuster SC (2015), Elephantid genomes reveal the molecular bases of woolly mammoth adaptations to the arcticCell Reports 12:217-28.

Perry GH & Orlando L (2015), Ancient DNA and human evolution. Journal of Human Evolution 79:1-3.

Kistler L, Ratan A, Godfrey LR, Crowley BE, Hughes CE, Lei R, Cui Y, Wood ML, Muldoon KM, Andriamialison H, McGraw JJ, Tomsho LP, Schuster SC, Miller W, Louis EE, Yoder AD, Malhi RS, & Perry GH (2015), Comparative and population mitogenomic analyses of Madagascar’s extinct, giant ‘subfossil’ lemurs. Journal of Human Evolution 79:45-54.

Perry GH, Kistler L, Keleita MA, & Sams AJ (2015), Insights into hominin phenotypic and dietary evolution from ancient DNA sequence data. Journal of Human Evolution 79:55-63.


Perry GH (2014), Parasites and human evolution. Evolutionary Anthropology 23:218-28.

Perry GH, Foll M, Grenier JC, Patin E, Nedelec Y, Pacis A, Barkatt M, Gravel S, Zhou X, Nsobya S, Excoffier L, Quintana-Murci L, Dominy NJ, & Barreiro LB (2014), Adaptive, convergent origins of the pygmy phenotype in African rainforest hunter-gatherers. Proceedings of the National Academy of Sciences, USA 111:E3596-603.

Kim HL, Ratan A, Perry GH, Montenegro A, Miller W, & Schuster SC (2014), Khoisan hunter-gatherers have been the largest population throughout the majority of modern human demographic history. Nature Communications 5:5692.

Hodgson JA, Pickrell JK, Pearson LN, Quillen EE, Prista A, Rocha J, Soodyall H, Shriver MD, & Perry GH (2014), Natural selection for the Duffy-null allele in the recently admixed people of Madagascar. Proceedings of the Royal Society B 281:2014930.

Perry GH (2014), The promise and practicality of population genomics research with endangered species. International Journal of Primatology 35:55-70.

Patin E, Siddle K, Laval G, Quach H, Harmant C, Becker N, Froment A, Regnault B, Lemee L, Gravel S, Hombert JM, Van der Veen L, Dominy NJ, Perry GH, Barreiro LB, Verdu P, Heyer E, & Quintana-Murci L (2014), The impact of agricultural emergence on the genetic history of African rainforest hunter-gatherers and agriculturalists. Nature Communications 5:3163.

Blekhman R, Perry GH, Shahbaz S, Fiehn O, Clark AG, & Gilad Y (2014), Comparative metabolomics in primates reveals the effects of diet and gene regulatory variation on metabolic divergence. Scientific Reports 4:5809.


Perry GH, Louis EE, Ratan A, Bedoya-Reina OC, Burhans R, Lei R, Johnson SE, Schuster SC, & Miller W (2013), Aye-aye population genomic analyses highlight an important center of endemism in northern Madagascar. Proceedings of the National Academy of Sciences, USA 110:5823-8.

Bedoya-Reina OC, Ratan A, Burhans R, Kim HL, Giardine B, Riemer C, Olson TL, Loughran TP, vonHoldt BM, Perry GH, Schuster SC, & Miller W (2013), Galaxy tools to study genome diversity. GigaScience 2:17.


Perry GH, Melsted P, Marioni JC, Wang Y, Bainer R, Pickrell JK, Michelini K, Zehr S, Yoder AD, Stephens M, Pritchard JK, & Gilad Y (2012), Comparative RNA sequencing reveals substantial genetic diversity in endangered primates. Genome Research 22:602-10.

Perry GH, Reeves D, Melsted P, Ratan A, Miller W, Michelini K, Louis EE, Pritchard JK, Mason CE, & Gilad Y (2012), A genome sequence resource for the aye-aye (Daubentonia madagascariensis), a nocturnal lemur from Madagascar. Genome Biology & Evolution 4:126-35.

Perry GH, Xue Y, Smith RS, Meyer WK, Çalışkan M, Yanez-Cuna O, Lee AS, Gutiérrez-Arcelus M, Ober C, Hollox EJ, Tyler-Smith C, & Lee C (2012), Evolutionary genetics of the human Rh blood group system. Human Genetics. 131:1205-16.

Iskow RC, Gokcumen O, Abyzov A, Malukiewicz J, Zhu Q, Sukumar AT, Pai AA, Mills RE, Habegger L, Cusanovich DA, Rubel MA, Perry GH, Gerstein M, Stone AC, Gilad Y, & Lee C (2012), Regulatory element copy number differences shape primate expression profiles. Proceedings of the National Academy of Sciences, USA 109:12656-61.

Lei R, Rowley TW, Zhu L, Bailey CA, Engberg SE, Wood ML, Christman MC, Perry GH, Louis EE, & Lu G (2012), PhyloMarker - a tool for mining phylogenetic markers through genome comparison: Application of the mouse lemur (genus Microcebus) phylogeny. Evolutionary Bioinformatics 8:423-35.


Perry GH, Marioni JC, Melsted P, & Gilad Y (2010), Genomic-scale capture and sequencing of endogenous DNA from feces. Molecular Ecology 19:5332-44.        

Luca F, Perry GH, & Di Rienzo A (2010), Evolutionary adaptations to dietary changes. Annual Review of Nutrition 30:291-314.

Perry GH & Pickrell JK (2010), A rod cell marker of nocturnal ancestryJournal of Human Evolution 58:207-10.

Stone AC, Battistuzzi FU, Kubatko LS, Perry GH, Trudeau E, Lin H, & Kumar S (2010), More reliable estimates in Pan using complete mtDNA sequences and accounting for population structure. Philosophical Transactions of the Royal Society B 365:3277-88.


Perry GH & Dominy NJ (2009), Evolution of the human pygmy phenotypeTrends in Ecology and Evolution 24:218-25.


Perry GH, Yang F, Marques-Bonet T, Murphy C, Fitzgerald T, Lee AS, Hyland C, Stone AC, Hurles ME, Tyler-Smith C, Carter NP, Lee C, & Redon R (2008), Copy number variation and evolution in humans and chimpanzeesGenome Research 18:1698-710.

Perry GH, Ben-Dor A, Tsalenko A, Sampas N, Rodriguez-Revenga L, Tran CW, Scheffer A, Steinfeld I, Tsang P, Yamada NA, Han Soo P, Il Kim J, Sun Seo J, Yakhini Z, Laderman S, Bruhn L, & Lee C (2008), The fine-scale and complex architecture of human copy-number variationAmerican Journal of Human Genetics 82:685-95.

Perry GH (2008), The evolutionary significance of copy number variation in the human genomeCytogenetic and Genome Research 123:283-87.

Lee AS, Gutiérrez-Arcelus M, Perry GH, Vallender EJ, Johnson WE, Miller GM, Korbel JO, & Lee C (2008), Analysis of copy number variation in the rhesus macaque genome identifies candidate loci for evolutionary and human disease studiesHuman Molecular Genetics 17:1127-36.

Verrelli BC, Stone AC, Lewis CM, & Perry GH (2008), Different selective pressures shape the molecular evolution of color vision in chimpanzee and human populationsMolecular Biology and Evolution 25:2735-43.


Perry GH, Dominy NJ, Claw CG, Lee AS, Fiegler H, Redon R, Werner J, Villanea FA, Mountain JL, Misra R, Carter NP, Lee C, & Stone AC (2007), Diet and the evolution of human amylase gene copy number variationNature Genetics 39:1256-60.

Perry GH, Martin RD, & Verrelli BC (2007), Signatures of functional constraint at aye-aye opsin genes: The potential of adaptive color vision in a nocturnal primateMolecular Biology and Evolution 24:1963-70.

Perry GH, Tito RY, & Verrelli BC (2007), The evolutionary history of human and chimpanzee Y-chromosome gene lossMolecular Biology and Evolution 24:853-9.


Redon R*, Ishikawa S*, Fitch KR*, Feuk L*, Perry GH*, Andrews TD, Fiegler H, …, Tyler-Smith C, Carter NP, Aburatani H, Lee C, Jones KW, Scherer SW, & Hurles ME (2006), Global variation in copy number in the human genomeNature 444:444-54.  *co-first authors

Perry GH, Tchinda J, McGrath SD, Zhang J, Picker SR, Caceres AM, Iafrate AJ, Tyler-Smith C, Scherer SW, Eichler EE, Stone AC, & Lee C (2006), Hotspots for copy number variation in chimpanzees and humansProceedings of the National Academy of Sciences, USA 103:8006-11.

Freeman JL, Perry GH, Feuk L, Redon R, McCarroll SA, Altshuler DM, Aburtani H, Jones KW, Tyler-Smith C, Hurles ME, Carter NP, Scherer SW, & Lee C (2006), Copy number variation: New insights in genome diversityGenome Research 16:949-61.

Perry GH, Verrelli BC, & Stone AC (2006), Molecular evolution of the primate developmental genes MSX1 and PAX9Molecular Biology and Evolution 23:644-54.

McCarroll SA, Hadnott TN, Perry GH, Sabeti PC, Zody MC, Barrett JC, Dallaire S, Gabriel SB, Lee C, Daly MJ, & Altshuler DM (2006), Common deletion polymorphisms in the human genomeNature Genetics 38:86-92.


Perry GH, Verrelli BC, & Stone AC (2005), Comparative analyses reveal a complex history of molecular evolution for human MYH16Molecular Biology and Evolution 22:379-82.